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Case
Summary
TypeCase
CategoryAdministrative
DescriptionThe collection of all data related to a specific subject in the context of a specific project.
Unique Keys
  • case_id
  • case_submitter_id


Links
NameRequiredLabel
ProjectTrueCase references the Project it belongs to.


Properties
NameDescriptionAcceptable Types/ValuesRequiredCDE
external_case_idIdentifier from other resources for this caseStringFalse -
disease_typeThe text term used to describe the type of malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).
  • Enumeration
    • Acinar Cell Neoplasms
    • Adenomas and Adenocarcinomas
    • Adnexal and Skin Appendage Neoplasms
    • Basal Cell Neoplasms
    • Blood Vessel Tumors
    • Chronic Myeloproliferative Disorders
    • Complex Epithelial Neoplasms
    • Complex Mixed and Stromal Neoplasms
    • Cystic, Mucinous and Serous Neoplasms
    • Ductal and Lobular Neoplasms
    • Epithelial Neoplasms, NOS
    • Fibroepithelial Neoplasms
    • Fibromatous Neoplasms
    • Germ Cell Neoplasms
    • Giant Cell Tumors
    • Gliomas
    • Granular Cell Tumors and Alveolar Soft Part Sarcomas
    • Hodgkin Lymphoma
    • Immunoproliferative Diseases
    • Leukemias, NOS
    • Lipomatous Neoplasms
    • Lymphatic Vessel Tumors
    • Lymphoid Leukemias
    • Malignant Lymphomas, NOS or Diffuse
    • Mast Cell Tumors
    • Mature B-Cell Lymphomas
    • Mature T- and NK-Cell Lymphomas
    • Meningiomas
    • Mesonephromas
    • Mesothelial Neoplasms
    • Miscellaneous Bone Tumors
    • Miscellaneous Tumors
    • Mucoepidermoid Neoplasms
    • Myelodysplastic Syndromes
    • Myeloid Leukemias
    • Myomatous Neoplasms
    • Myxomatous Neoplasms
    • Neoplasms, NOS
    • Neoplasms of Histiocytes and Accessory Lymphoid Cells
    • Nerve Sheath Tumors
    • Neuroepitheliomatous Neoplasms
    • Nevi and Melanomas
    • Non-Clear Cell Renal Cell Carcinoma
    • Odontogenic Tumors
    • Osseous and Chondromatous Neoplasms
    • Other Hematologic Disorders
    • Other Leukemias
    • Paragangliomas and Glomus Tumors
    • Plasma Cell Tumors
    • Precursor Cell Lymphoblastic Lymphoma
    • Soft Tissue Tumors and Sarcomas, NOS
    • Specialized Gonadal Neoplasms
    • Squamous Cell Neoplasms
    • Synovial-like Neoplasms
    • Thymic Epithelial Neoplasms
    • Transitional Cell Papillomas and Carcinomas
    • Trophoblastic neoplasms
    • Unknown
    • Not Reported
    • Not Applicable
    • Acute Lymphoblastic Leukemia
    • Acute Myeloid Leukemia
    • Adrenocortical Carcinoma
    • Bladder Urothelial Carcinoma
    • Brain Lower Grade Glioma
    • Breast Invasive Carcinoma
    • Burkitt Lymphoma
    • Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma
    • Cholangiocarcinoma
    • Chronic Lymphocytic Leukemia
    • Clear Cell Sarcoma of the Kidney
    • Colon Adenocarcinoma
    • Esophageal Carcinoma
    • Glioblastoma Multiforme
    • Head and Neck Squamous Cell Carcinoma
    • High-Risk Wilms Tumor
    • HIV+ Tumor Molecular Characterization Project - Cervical Cancer
    • HIV+ Tumor Molecular Characterization Project - Lung Cancer
    • Kidney Chromophobe
    • Kidney Renal Clear Cell Carcinoma
    • Kidney Renal Papillary Cell Carcinoma
    • Liver Hepatocellular Carcinoma
    • Lung Adenocarcinoma
    • Lung Squamous Cell Carcinoma
    • Lymphoid Neoplasm Diffuse Large B-cell Lymphoma
    • Mesothelioma
    • Multiple Myeloma
    • Neuroblastoma
    • Osteosarcoma
    • Ovarian Serous Cystadenocarcinoma
    • Pancreatic Adenocarcinoma
    • Pheochromocytoma and Paraganglioma
    • Prostate Adenocarcinoma
    • Rectum Adenocarcinoma
    • Rhabdoid Tumor
    • Sarcoma
    • Skin Cutaneous Melanoma
    • Stomach Adenocarcinoma
    • Testicular Germ Cell Tumors
    • Thymoma
    • Thyroid Carcinoma
    • Uterine Adenocarcinoma
    • Uterine Carcinosarcoma
    • Uterine Corpus Endometrial Carcinoma
    • Uveal Melanoma
    • Clear Cell Renal Cell Carcinoma
    • Early Onset Gastric Cancer
    • Glioblastoma
    • Other
    • Hepatocellular Carcinoma
    • Chromophobe Renal Cell Carcinoma
    • Papillary Renal Cell Carcinoma
    • Pediatric/AYA Brain Tumors
    • Oral Squamous Cell Carcinoma
    • Pancreatic Ductal Adenocarcinoma
    • Show more items...
True
6161017CDE - caDSR
poolAny biospecimen entity where multiple cases, samples or aliquots are combined to produce a reference. Sample pooling is commonly used for determining relative protein abundances in labeling experiments.
  • Enumeration
    • Yes
    • No
True -
primary_siteThe text term used to describe the general location of the malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).
  • Enumeration
    • Accessory sinuses
    • Anus and anal canal
    • Base of tongue
    • Bladder
    • Bones, joints and articular cartilage of limbs
    • Bones, joints and articular cartilage of other and unspecified sites
    • Brain
    • Breast
    • Bronchus and lung
    • Cervix uteri
    • Colon
    • Connective, subcutaneous and other soft tissues
    • Corpus uteri
    • Esophagus
    • Eye and adnexa
    • Floor of mouth
    • Gallbladder
    • Gum
    • Heart, mediastinum, and pleura
    • Hematopoietic and reticuloendothelial systems
    • Hypopharynx
    • Kidney
    • Larynx
    • Lip
    • Liver and intrahepatic bile ducts
    • Meninges
    • Nasal cavity and middle ear
    • Nasopharynx
    • Oropharynx
    • Other and ill-defined digestive organs
    • Other and ill-defined sites
    • Other and ill-defined sites in lip, oral cavity and pharynx
    • Other and ill-defined sites within respiratory system and intrathoracic organs
    • Other and unspecified female genital organs
    • Other and unspecified major salivary glands
    • Other and unspecified male genital organs
    • Other and unspecified parts of biliary tract
    • Other and unspecified parts of mouth
    • Other and unspecified parts of tongue
    • Other and unspecified urinary organs
    • Other endocrine glands and related structures
    • Ovary
    • Palate
    • Pancreas
    • Parotid gland
    • Penis
    • Peripheral nerves and autonomic nervous system
    • Placenta
    • Prostate gland
    • Pyriform sinus
    • Rectosigmoid junction
    • Rectum
    • Renal pelvis
    • Retroperitoneum and peritoneum
    • Skin
    • Small intestine
    • Spinal cord, cranial nerves, and other parts of central nervous system
    • Stomach
    • Testis
    • Thymus
    • Thyroid gland
    • Tonsil
    • Trachea
    • Ureter
    • Uterus, NOS
    • Vagina
    • Vulva
    • Unknown
    • Not Reported
    • Bile Duct
    • Blood
    • Bone
    • Bone Marrow
    • Cervix
    • Colorectal
    • Eye
    • Head and Neck
    • Liver
    • Lung
    • Nervous System
    • Not Applicable
    • Pleura
    • Prostate
    • Soft Tissue
    • Thyroid
    • Uterus
    • Adrenal gland
    • Lymph nodes
    • Show more items...
True
6161019CDE - caDSR
statusSpecifies if the case is qualified or disqualified for any reason. Usually the data related to such cases may be not used in the data analysis.
  • Enumeration
    • Qualified
    • Disqualified
True -
taxonA taxonomic group, such as a species.
  • Enumeration
    • Trichomonas vaginalis
    • Bemisia tabaci (Gennadius)
    • Escherichia coli
    • Rattus norvegicus
    • Mycoplasma pneumoniae
    • Takifugu rubripes
    • Pneumocystis carinii
    • Canis familiaris
    • Arabidopsis thaliana
    • Dictyostelium discoideum
    • Oryza sativa
    • Plasmodium falciparum
    • Anopheles gambiae
    • Chlamydomonas reinhardtii
    • Caenorhabditis remanei
    • Schizosaccharomyces pombe
    • Pseudomonas aeruginosa
    • Staphylococcus aureus
    • Gallus gallus
    • Zea mays
    • Caenorhabditis briggsae
    • Haliotis rufescens
    • Xenopus laevis
    • Mucata mulata
    • Unspecified
    • Bos taurus
    • Caenorhabditis elegans
    • Danio rerio (zebrafish)
    • Hepatitis C virus
    • Saccharomyces cerevisiae
    • Drosophila melanogaster
    • Sus scrofa
    • Gasterosteus aculeatus (fish)
    • Homo sapiens
    • Mus musculus
    • Not Reported
    • Homo sapiens; Mus musculus
    • Show more items...
True -
case_is_refA biospecimen entity which is used as a reference sample for determining relative protein abundances in labeling experiments.
  • Enumeration
    • Yes
    • No
False -
consent_typeThe text term used to describe the type of consent obtain from the subject for participation in the study.
  • Enumeration
    • Consent by Death
    • Consent Exemption
    • Consent Waiver
    • Informed Consent
False -
days_to_consentNumber of days between the date used for index and the date the subject consent was obtained for participation in the study.IntegerFalse -
days_to_lost_to_followupThe number of days between the date used for index and to the date the patient was lost to follow-up.IntegerFalse
6154721CDE - caDSR
index_dateThe text term used to describe the reference or anchor date used when for date obfuscation, where a single date is obscured by creating one or more date ranges in relation to this date.
  • Enumeration
    • Diagnosis
    • First Patient Visit
    • First Treatment
    • Initial Genomic Sequencing
    • Sample Procurement
    • Study Enrollment
    • Recurrence
    • Show more items...
False
6154722CDE - caDSR
lost_to_followupThe yes/no/unknown indicator used to describe whether a patient was unable to be contacted or seen for follow-up information.
  • Enumeration
    • Yes
    • No
    • Unknown
False
6161018CDE - caDSR