CPTAC Pan-Cancer Data
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Welcome to the CPTAC Pan-Cancer Analysis Page! This page provides information about the data generated by the National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) through the application of large-scale proteomic and genomic analysis to conduct a comprehensive and interconnected proteogenomic characterization of the most prevalent types of cancer.

Along with clinical and imaging data, this proteogenomic resource will further our understanding of the molecular changes that drive cancer development and progression, and support efforts to identify commonalities across different types of cancer and develop new strategies for diagnosis, treatment, and prevention.

On this page, you will find a collection of the papers focused on a first analysis of the data, as well as links to the data itself and supplementary materials from these publications.
Supplementary Information
Additional Resources
Cancer Data Service
Description - A reharmonized genomic data freeze corresponding to a Pan-Cancer analysis of 10 tumor types is available via the NCI Cancer Data Service (CDS). More information about the NCI CDS is available here: https://datacommons.cancer.gov/repository/cancer-data-service. The primary study is registered at dbGaP Study Accession: phs001287.v16.p6 and the genomic raw sequencing files for this study are available at the Genomic Data Commons (GDC).
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