Summary
TypeCase
CategoryAdministrative
Description
The collection of all data related to a specific subject in the context of a specific project.
Unique Keys
  • case_id
  • case_submitter_id

NameRequiredLabel
ProjectTrueCase references the Project it belongs to.

Properties
NameDescriptionAcceptable Types/ValuesRequiredCDE
case_is_refA biospecimen entity which is used as a reference sample for determining relative protein abundances in labeling experiments.
Enumeration
  • Yes
  • No
    False
    -
    The text term used to describe the type of consent obtain from the subject for participation in the study.
    Enumeration
    • Consent by Death
    • Consent Exemption
    • Consent Waiver
    • Informed Consent
    False
    -
    Number of days between the date used for index and the date the subject consent was obtained for participation in the study.
    Integer
    False
    -
    days_to_lost_to_followupThe number of days between the date used for index and to the date the patient was lost to follow-up.
    Integer
    False
    6154721 - caDSR
    disease_typeThe text term used to describe the type of malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).
    Enumeration
    • Acinar Cell Neoplasms
    • Adenomas and Adenocarcinomas
    • Adnexal and Skin Appendage Neoplasms
    • Basal Cell Neoplasms
    • Blood Vessel Tumors
    • Chronic Myeloproliferative Disorders
    • Complex Epithelial Neoplasms
    • Complex Mixed and Stromal Neoplasms
    • Cystic, Mucinous and Serous Neoplasms
    • Ductal and Lobular Neoplasms
    • Epithelial Neoplasms, NOS
    • Fibroepithelial Neoplasms
    • Fibromatous Neoplasms
    • Germ Cell Neoplasms
    • Giant Cell Tumors
    • Gliomas
    • Granular Cell Tumors and Alveolar Soft Part Sarcomas
    • Hodgkin Lymphoma
    • Immunoproliferative Diseases
    • Leukemias, NOS
    • Lipomatous Neoplasms
    • Lymphatic Vessel Tumors
    • Lymphoid Leukemias
    • Malignant Lymphomas, NOS or Diffuse
    • Mast Cell Tumors
    • Mature B-Cell Lymphomas
    • Mature T- and NK-Cell Lymphomas
    • Meningiomas
    • Mesonephromas
    • Mesothelial Neoplasms
    • Miscellaneous Bone Tumors
    • Miscellaneous Tumors
    • Mucoepidermoid Neoplasms
    • Myelodysplastic Syndromes
    • Myeloid Leukemias
    • Myomatous Neoplasms
    • Myxomatous Neoplasms
    • Neoplasms, NOS
    • Neoplasms of Histiocytes and Accessory Lymphoid Cells
    • Nerve Sheath Tumors
    • Neuroepitheliomatous Neoplasms
    • Nevi and Melanomas
    • Non-Clear Cell Renal Cell Carcinoma
    • Odontogenic Tumors
    • Osseous and Chondromatous Neoplasms
    • Other Hematologic Disorders
    • Other Leukemias
    • Paragangliomas and Glomus Tumors
    • Plasma Cell Tumors
    • Precursor Cell Lymphoblastic Lymphoma
    • Soft Tissue Tumors and Sarcomas, NOS
    • Specialized Gonadal Neoplasms
    • Squamous Cell Neoplasms
    • Synovial-like Neoplasms
    • Thymic Epithelial Neoplasms
    • Transitional Cell Papillomas and Carcinomas
    • Trophoblastic neoplasms
    • Unknown
    • Not Reported
    • Not Applicable
    • Acute Lymphoblastic Leukemia
    • Acute Myeloid Leukemia
    • Adrenocortical Carcinoma
    • Bladder Urothelial Carcinoma
    • Brain Lower Grade Glioma
    • Breast Invasive Carcinoma
    • Burkitt Lymphoma
    • Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma
    • Cholangiocarcinoma
    • Chronic Lymphocytic Leukemia
    • Clear Cell Sarcoma of the Kidney
    • Colon Adenocarcinoma
    • Esophageal Carcinoma
    • Glioblastoma Multiforme
    • Head and Neck Squamous Cell Carcinoma
    • High-Risk Wilms Tumor
    • HIV+ Tumor Molecular Characterization Project - Cervical Cancer
    • HIV+ Tumor Molecular Characterization Project - Lung Cancer
    • Kidney Chromophobe
    • Kidney Renal Clear Cell Carcinoma
    • Kidney Renal Papillary Cell Carcinoma
    • Liver Hepatocellular Carcinoma
    • Lung Adenocarcinoma
    • Lung Squamous Cell Carcinoma
    • Lymphoid Neoplasm Diffuse Large B-cell Lymphoma
    • Mesothelioma
    • Multiple Myeloma
    • Neuroblastoma
    • Osteosarcoma
    • Ovarian Serous Cystadenocarcinoma
    • Pancreatic Adenocarcinoma
    • Pheochromocytoma and Paraganglioma
    • Prostate Adenocarcinoma
    • Rectum Adenocarcinoma
    • Rhabdoid Tumor
    • Sarcoma
    • Skin Cutaneous Melanoma
    • Stomach Adenocarcinoma
    • Testicular Germ Cell Tumors
    • Thymoma
    • Thyroid Carcinoma
    • Uterine Adenocarcinoma
    • Uterine Carcinosarcoma
    • Uterine Corpus Endometrial Carcinoma
    • Uveal Melanoma
    • Clear Cell Renal Cell Carcinoma
    • Early Onset Gastric Cancer
    • Glioblastoma
    • Other
    • Hepatocellular Carcinoma
    • Chromophobe Renal Cell Carcinoma
    • Papillary Renal Cell Carcinoma
    • Pediatric/AYA Brain Tumors
    • Oral Squamous Cell Carcinoma
    • Pancreatic Ductal Adenocarcinoma
    Show more items...
    True
    6161017 - caDSR
    external_case_idIdentifier from other resources for this case
    String
    False
    -
    index_dateThe text term used to describe the reference or anchor date used when for date obfuscation, where a single date is obscured by creating one or more date ranges in relation to this date.
    Enumeration
    • Diagnosis
    • First Patient Visit
    • First Treatment
    • Initial Genomic Sequencing
    • Sample Procurement
    • Study Enrollment
    • Recurrence
    Show more items...
    False
    6154722 - caDSR
    lost_to_followupThe yes/no/unknown indicator used to describe whether a patient was unable to be contacted or seen for follow-up information.
    Enumeration
    • Yes
    • No
    • Unknown
      False
      6161018 - caDSR
      poolAny biospecimen entity where multiple cases, samples or aliquots are combined to produce a reference. Sample pooling is commonly used for determining relative protein abundances in labeling experiments.
      Enumeration
      • Yes
      • No
        True
        -
        primary_siteThe text term used to describe the general location of the malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).
        Enumeration
        • Accessory sinuses
        • Anus and anal canal
        • Base of tongue
        • Bladder
        • Bones, joints and articular cartilage of limbs
        • Bones, joints and articular cartilage of other and unspecified sites
        • Brain
        • Breast
        • Bronchus and lung
        • Cervix uteri
        • Colon
        • Connective, subcutaneous and other soft tissues
        • Corpus uteri
        • Esophagus
        • Eye and adnexa
        • Floor of mouth
        • Gallbladder
        • Gum
        • Heart, mediastinum, and pleura
        • Hematopoietic and reticuloendothelial systems
        • Hypopharynx
        • Kidney
        • Larynx
        • Lip
        • Liver and intrahepatic bile ducts
        • Meninges
        • Nasal cavity and middle ear
        • Nasopharynx
        • Oropharynx
        • Other and ill-defined digestive organs
        • Other and ill-defined sites
        • Other and ill-defined sites in lip, oral cavity and pharynx
        • Other and ill-defined sites within respiratory system and intrathoracic organs
        • Other and unspecified female genital organs
        • Other and unspecified major salivary glands
        • Other and unspecified male genital organs
        • Other and unspecified parts of biliary tract
        • Other and unspecified parts of mouth
        • Other and unspecified parts of tongue
        • Other and unspecified urinary organs
        • Other endocrine glands and related structures
        • Ovary
        • Palate
        • Pancreas
        • Parotid gland
        • Penis
        • Peripheral nerves and autonomic nervous system
        • Placenta
        • Prostate gland
        • Pyriform sinus
        • Rectosigmoid junction
        • Rectum
        • Renal pelvis
        • Retroperitoneum and peritoneum
        • Skin
        • Small intestine
        • Spinal cord, cranial nerves, and other parts of central nervous system
        • Stomach
        • Testis
        • Thymus
        • Thyroid gland
        • Tonsil
        • Trachea
        • Ureter
        • Uterus, NOS
        • Vagina
        • Vulva
        • Unknown
        • Not Reported
        • Bile Duct
        • Blood
        • Bone
        • Bone Marrow
        • Cervix
        • Colorectal
        • Eye
        • Head and Neck
        • Liver
        • Lung
        • Nervous System
        • Not Applicable
        • Pleura
        • Prostate
        • Soft Tissue
        • Thyroid
        • Uterus
        • Adrenal gland
        • Lymph nodes
        Show more items...
        True
        6161019 - caDSR
        statusSpecifies if the case is qualified or disqualified for any reason. Usually the data related to such cases may be not used in the data analysis.
        Enumeration
        • Qualified
        • Disqualified
          True
          -
          taxonA taxonomic group, such as a species.
          Enumeration
          • Trichomonas vaginalis
          • Bemisia tabaci (Gennadius)
          • Escherichia coli
          • Rattus norvegicus
          • Mycoplasma pneumoniae
          • Takifugu rubripes
          • Pneumocystis carinii
          • Canis familiaris
          • Arabidopsis thaliana
          • Dictyostelium discoideum
          • Oryza sativa
          • Plasmodium falciparum
          • Anopheles gambiae
          • Chlamydomonas reinhardtii
          • Caenorhabditis remanei
          • Schizosaccharomyces pombe
          • Pseudomonas aeruginosa
          • Staphylococcus aureus
          • Gallus gallus
          • Zea mays
          • Caenorhabditis briggsae
          • Haliotis rufescens
          • Xenopus laevis
          • Mucata mulata
          • Unspecified
          • Bos taurus
          • Caenorhabditis elegans
          • Danio rerio (zebrafish)
          • Hepatitis C virus
          • Saccharomyces cerevisiae
          • Drosophila melanogaster
          • Sus scrofa
          • Gasterosteus aculeatus (fish)
          • Homo sapiens
          • Mus musculus
          • Not Reported
          • Homo sapiens; Mus musculus
          Show more items...
          True
          -
          Warning